Home |  JournalSeek |  SoftwareSeek |  GenomeSeek |  Expression |  Developer |  TakeOnIt
Return to Genamics Home

Search Results

Your search returned 65 matches.

Pages: 1 2 3 [>>]

FASTA to multi-FASTA converter Mac  Windows
This freeware tool will look for all FASTA files in the specified folder and will merge their content in a single file, generating a standard or custom Multi-FASTA file. FREEWARE!
Web Site Home Web Site: FASTA 2 multiFASTA

ABI to FASTA free converter Windows
This free tool will batch convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button. With this automatic converter you can convert hundreds or thousands of ABI chromatogram files in seconds. All with A SINGLE PUSH OF A BUTTON! ---------- No installation process is required.
Web Site Home Web Site: DNA Baser Contig Assembler

AiO Windows
Software package combining DNA/protein programs with oligonucleotide Data Base management. It is written multi-user and multi-group. However, it can be run on a single PC for single user. Features: DNA-editor, DNA with restriction enzymes, DNA with oligos, PCR tables, plasmid maps, linear maps, dotplot, alignments, ORF finding, translate, backtranslate, flow (virtual cloning), editors for data banks (oligos, structural DNA etc), online oligo ordering..........
Web Site Home Web Site: AiO - All in One - AiO

Aligner Internet Browser
With this tool you can align easily your multiple sequences DNA or protein, based on a Clustalw engine.
Web Site Home Web Site: JustBio.com

ApE Linux  Mac  Unix  Windows
ApE is designed to be an all-in-one molecular biology workbench. It can read strider, EMBL, genbank, Fasta sequence file formats. In addition it can read and display ABI trace files. It can query and download from the NCBI EMBL database and can blast sequences directly at the NCBI BLAST server. Sequence features can be added individually or automatically from pre-defined feature definition libraries. It can draw graphic (liear or circular) and text-based restriction maps that include annotated features of the sequence. It contains a restriction enzyme choser that can perform boolean queries for enzymes that match cut frequency and enzyme property parameters. It can show virtual agarose gels. It can align two sequences or a sequence and an ABI trace file. It can search selected sequence for potential PCR primers matching given parameters. All analysis functions are hyperlinked back to the original sequence. Other features of the program are listed on the website.
Web Site Home Web Site: ApE- A plasmid Editor

BOXSHADE 3.0 MS-DOS  Unix  VMS
BOXSHADE is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does no alignment by itself, it has to take as input a file preprocessed by a multiple alignment program or a multiple file editor. This archive file contains a DOS executable and universal PASCAL source code together with appropriate makefiles or scripts for building the program for other systems.
Download  (91 kb, 29-Mar-1996)

CINEMA Internet Browser
CINEMA is a Colour INteractive Editor for Multiple Alignments. The program allows visualisation and manipulation of both protein and DNA sequences.
Web Site Home Web Site: University College London

CLC Combined Workbench Linux  Mac  Windows
CLC Combined Workbench 1.0 aggregates all DNA sequence analyses of CLC Gene Workbench and all protein sequence analyses of CLC Protein Workbench. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are - Assembly of DNA sequencing data - Advanced primer design - Molecular cloning - Automatic SNP annotation of sequences - Secondary protein structure prediction - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Protein family analysis (PFAM) - 2 types of alignments - Phylogenetics - Motif search (known patterns) - Pattern discovery (unknown patterns) - BLAST - Batch processing of multiple analyses in one work-step - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, SwissProt, TrEMBL, and PubMed - Detailed log of actions/analyses performed
Web Site Home Web Site: CLC bio

CLC Free Workbench 1.0 Linux  Mac  Windows
CLC Free Workbench creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of DNA, RNA and proteins (2 alignment algorithms) - Open reading frame determination - Translation from DNA to proteins (all genetic translation tables) - Reports with residue composition, molecular weight and iso electric point (for proteins) - Neighbor-joining and UPGMA phylogenies - Restriction site analysis and viewing - Other reporting facilities - Import/export to a number of data formats - Launch of external files - Detailed History Log
Web Site Home Web Site: CLC bio

CLC Gene Workbench Linux  Mac  Windows
CLC Gene Workbench 1.0 provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are - Assembly of DNA sequencing data - Advanced primer design - Molecular cloning - Automatic SNP annotation of sequences - 2 types of alignments - Phylogenetics - Motif search (known patterns) - Pattern discovery (unknown patterns) - BLAST - Batch processing of multiple analyses in one work-step - Dot plots - Hydrophobicity analyses - Searches on GenBank and PubMed - Detailed log of actions/analyses performed
Web Site Home Web Site: CLC bio

CLC Protein Workbench Linux  Mac  Windows
CLC Protein Workbench 1.5 provides a wide range of advanced protein sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are - Advanced and integrated 3D molecular viewer - 2 types of alignments - Phylogenetics - Secondary protein structure prediction - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Motif search (known patterns) - Pattern discovery (unknown patterns) - BLAST - Batch processing of multiple analyses in one work-step - Protein family analysis (PFAM) - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed - Detailed log of actions/analyses performed
Web Site Home Web Site: CLC bio

CLC RNA Workbench Linux  Mac  Windows
CLC RNA Workbench aggregates a large number of advanced RNA sequence analyses and other bioinformatics analyses in one single, integrated, user-friendly, and intuitive software application. Some features are Secondary RNA structure prediction, Graphical view and editing of secondary RNA structures, Tabular view of RNA structures and RNA energy contributions, Symbolic representation of RNAs in sequence view, Pattern search, Search for sequence matches, Motif search for basic patterns, Motif search using regular expressions, Motif search with ProSite patterns, Pattern discovery (unknown patterns), Project and data management, Detailed history log, All types of files can be saved in local projects, and launched from the program, DNA, RNA and protein sequence editor displaying both linear and circular molecules, Multiple alignment of DNA, RNA, and proteins: ClustalW, Muscle, T-Coffee, MAFFT, Kalign. Interactive logo graphs along both DNA, RNA and Protein alignments, BLAST, and much more.
Web Site Home Web Site: www.clcbio.com

Chromas1.2 Windows
This program displays and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files and it allows the user to manipulate the sequences.
Web Site Home Web Site: Technelysium

Chromatogram Explorer-Exploring and trimming your chromatograms is not a problem anymore Mac  Windows
Chromatogram Explorer is a very easy to use tool that will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. You can view the chromatograms while browsing through folders using its integrated Windows Explorer. Chromatogram Explorer can also trim low quality bases at the ends of your samples with a single push of a button! Now you can process/sort/search chromatograms in seconds.
Web Site Home Web Site: DNA Baser - Free biology software

Cleaner Internet Browser
With this tool you can simply and quickly clean your sequences from unwanted text marks and spaces. This is useful after retrieving sequences from online databases for example.
Web Site Home Web Site: JustBio.com

CluClean (ClustalW Cleaner) Windows
CLUCLEAN makes the CLUSTALW output more readable. You can select a reference sequence and view the homology between the selected sequence and the other sequences. CLUCLEAN replaces the bases that are identical to the selected sequence by a dot. CLUCLEAN can also calculate a consensus sequence based on the user-defined homology percent.
Web Site Home Web Site: Olivier Friard

Colorseq Internet Browser
Tool to highlight (in red) a selected set of residues in a protein sequence.
Web Site Home Web Site: PBIL

Cutter Internet Browser
With this tool you can quickly get the list of all enzyme restriction sites on your sequence.
Web Site Home Web Site: JustBio.com

DNA Stacks Software Package v. 1.2 Mac
Utilities for molecular systematics include format conversions, colored alignment display, mitochondrial genome map comparisons (requires HyperCard or HyperCard Player).
Web Site Home Web Site: California State University Fullerton

DNA for Windows Windows
A compact DNA sequence analysis program, with features including sequence editing, translation, restiction site location, contig assembly, codon usage and chromatogram (ABI, SCF) file viewing, editing, printing and aligning. Registered version is now fully Windows XP compatible.
Web Site Home Web Site: DNA for Windows

Drawhca Internet Browser
Draw an HCA (Hydrophobic Cluster Analysis) plot of a protein sequence.
Web Site Home Web Site: LMCP

Easy Cloner 1 MS-DOS
Simulation of DNA cloning including plasmid map drawing.
Download  (105 kb, 11-Jul-1991)

ElDorado/Gene2Promoter Internet Browser  Linux  Mac  Unix  Windows
More than 100 gigabytes of condensed, filtered, quality checked and ranked information on morte than 10 genomes. A condensation of publicly available data from a variety of resources plus Genomatix proprietary annotation, including promoters, transcription factor binding sites, promoter modules, scaffold/matrix attachment regions, single nucleotide polymorphisms, and much more.
Web Site Home Web Site: Genomatix

Expression Windows
Expression is a revolutionary new application for DNA and protein sequence analysis. Utilising a novel interface, Expression makes complex computational analyses of sequence information incredibly simple. Expression uses the very latest computing technology to set new standards in the way sequences are analysed. Features include: Sequence Annotation,Graphical Sequence Map, Degenerate DNA and Amino Acid Sequence Support, Restriction Analysis, Primer Design and Analysis, ORF Prediction, Pattern Finding, Reverse Translation, GenBank Searching, Pattern and Motif Identification, Multiple Sequence Alignment, and Protein Structure Prediction.
Web Site Home Web Site: Genamics

Fast chromatogram viewer Windows
This freeware tool will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. You can view the chromatogram by simply clicking a file. Install process: You do not need to install it. Just download the program and double click to run it. It does not need additional software, updates, DLLs or Java to run it. To uninstall it just delete the program.
Web Site Home Web Site: Fast chromatogram viewer

Pages: 1 2 3 [>>]









Add To Favorites
Email This Page



Side Panel
Privacy Policy About Us Contact Us