| ABI to FASTA free converter
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Windows |
| This free tool will batch convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button. With this automatic converter you can convert hundreds or thousands of ABI chromatogram files in seconds. All with A SINGLE PUSH OF A BUTTON! ---------- No installation process is required. |
 Web Site: DNA Baser Contig Assembler
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| ACEDB
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Windows |
| A database manager that refers to a database and data concerning nematode C. elegans, or to the database software alone. Allows cross-referencing during loading. |
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Web Site: A Caenorhabditis Elegans Database
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| AGM Build
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Linux Windows |
| A molecular builder and conformational editor. AGM Build can be used for interactive model preparation for molecular dynamics simulations, including association of atom types and partial charges. Features: * Geometry editing * Lattice building * Building of chain molecules * Chains with predetermined conformations * Charges and atom types according to selected Force Field |
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Web Site: Agile Molecule
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| ALP
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Windows |
| Automated Linkage Preprocessor. Determines sizes of microsatellite fragments separated on an A.L.F. Sequencer (Pharmacia Biotech), removes stutter, performs genotyping and Mendelian checks, and formats data for Lathrop's Linkage Program Package. |
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Web Site: MRC Human Genetics Unit
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| Advanced planning and production scheduling software for biotechnology companies
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Windows |
| We develop and market advanced planning and production scheduling software for biotechnology companies around the world. |
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Web Site: Taylor Scheduling Software
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| Allergens in Swiss_prot
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Internet Browser |
| Nomenclature and index of allergen sequences in the SWISS-PROT Protein Sequence Data Bank. |
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Web Site: Expasy
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| Arabidopsis: the Compleat Guide
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Internet Browser |
| Detailed information on growth, tissue culture, DNA/RNA techniques, YACs and microscopy relating to Arabidopsis. |
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Web Site: Stanford Genomic Resources
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| BKGCuclc Fonts
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Mac |
| Colour fonts for use with sequence editors. |
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Download (65 kb, 04-Jun-1993) |
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| Becoming a Successful Scientist
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Internet Browser |
| Provides information and links of interest on succeeding in scientific research. |
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Web Site: Becoming a Successful Scientist
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| Beyond Bio 101
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Mac Unix Windows |
| This book describes the changes taking place in how American college students learn biology. |
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Web Site: Howard Hughes Medical Institute
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| BibioSphere PathwayEdition
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Internet Browser Linux Mac Unix Windows |
| BiblioSpherePE allows for dynamic data-driven network/pathway construction and analysis based on literature, the Genomatix Knowledge Base, and promoter DNA sequence analysis. It is an important component of the micro array data analysis pipeline offered by Genomatix. |
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Web Site: Genomatix
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| Bigmouth
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MS-DOS |
| Digitized sounds and utilities for TypeSeq and DigiSeq. |
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Download (170 kb, 13-Feb-1990) |
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| BioABACUS
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Internet Browser |
| BioABACUS is a searchable database of abbreviations and acronyms in Biotechnology that contains terms in such categories as: Biochemistry, Cell Biology, Computers and Internet, Diseases, Grants, Journals, Laboratories, Medicine, Molecular Biology/Genetics, Neuroscience, Other Organizations, Professional Societies and US Government. The data provided include the name of the term, its meaning, the category in which it is mostly used and, when available, a link in which additional information for the term can be found. |
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Web Site: New Mexico State University
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| BioMapper
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Internet Browser Windows |
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Web Site: BIOGIS Biodiversity, Geo and Metadata Management Solutions
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| BioOffice
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Internet Browser Windows |
| BioOffice from BIOGIS Consulting is a tool for input, mapping, spatial analysis and exchange of biological distribution data and collections. This application for professional biodiversity data management is used at many natural history museums and universities in Europe and also in international projects. |
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Web Site: BioOffice Biodiversity Data Management Solutions
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| Biochemistry, Molecular Biology, and Cell Biology Protocols
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| Life sciences methods and protocols focusing on biochemistry, molecular biology, and cell biology experiments. |
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Web Site: Biochemistry, Molecular Biology, and Cell Biology Protocols
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| Biocompare
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Internet Browser |
| Biocompare helps life scientists find scientific products by providing complete, unbiased product information, including reviews, profiles of new technologies and links directly to supplier product pages. With Biocompare, perform side-by-side comparisons of product specifications and prices, to make informed decisions. |
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Web Site: Biocompare
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| CL!Psci
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Windows |
Fastest, most efficient free search engine for scientific researchers. The CL!Psci Scientific Search Engine is a superfast and efficient, free Google-like software, designed to meet the specialized and intensive, web-based information need of the life science researcher. - Customize a menu of your most commonly used scientific search engines
- Right-click on a word or phrase to automatically execute multiple searches, eliminating time-consuming typing or "copy and paste" into search fields
- With one click, browse a consolidated supplier catalog to get to the right product faster than ever
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Web Site: CL!Psci
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| CLC Bioinformatics Cell
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Linux Mac Windows |
| CLC Bioinformatics Cell is a High Performance Computing product, accelerating Smith Waterman based BLAST-searches up to 400 times and Clustal W alignments up to 20 times. It can be run command line with the same parameters as NCBI BLAST, or through the graphical user interface of CLC Gene Workbench, CLC Protein Workbench, or CLC Combined Workbench. |
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Web Site: CLC Bioinformatics Cell
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| CLC Free Workbench 1.0
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Linux Mac Windows |
| CLC Free Workbench creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of DNA, RNA and proteins (2 alignment algorithms) - Open reading frame determination - Translation from DNA to proteins (all genetic translation tables) - Reports with residue composition, molecular weight and iso electric point (for proteins) - Neighbor-joining and UPGMA phylogenies - Restriction site analysis and viewing - Other reporting facilities - Import/export to a number of data formats - Launch of external files - Detailed History Log |
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Web Site: CLC bio
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| CLC Protein Workbench
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Linux Mac Windows |
| CLC Protein Workbench 1.5 provides a wide range of advanced protein sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are - Advanced and integrated 3D molecular viewer - 2 types of alignments - Phylogenetics - Secondary protein structure prediction - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Motif search (known patterns) - Pattern discovery (unknown patterns) - BLAST - Batch processing of multiple analyses in one work-step - Protein family analysis (PFAM) - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed - Detailed log of actions/analyses performed |
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Web Site: CLC bio
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| CLC RNA Workbench
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Linux Mac Windows |
| CLC RNA Workbench aggregates a large number of advanced RNA sequence analyses and other bioinformatics analyses in one single, integrated, user-friendly, and intuitive software application. Some features are Secondary RNA structure prediction, Graphical view and editing of secondary RNA structures, Tabular view of RNA structures and RNA energy contributions, Symbolic representation of RNAs in sequence view, Pattern search, Search for sequence matches, Motif search for basic patterns, Motif search using regular expressions, Motif search with ProSite patterns, Pattern discovery (unknown patterns), Project and data management, Detailed history log, All types of files can be saved in local projects, and launched from the program, DNA, RNA and protein sequence editor displaying both linear and circular molecules, Multiple alignment of DNA, RNA, and proteins: ClustalW, Muscle, T-Coffee, MAFFT, Kalign. Interactive logo graphs along both DNA, RNA and Protein alignments, BLAST, and much more. |
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Web Site: www.clcbio.com
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| Chromatogram Explorer-Exploring and trimming your chromatograms is not a problem anymore
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Mac Windows |
| Chromatogram Explorer is a very easy to use tool that will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. You can view the chromatograms while browsing through folders using its integrated Windows Explorer. Chromatogram Explorer can also trim low quality bases at the ends of your samples with a single push of a button! Now you can process/sort/search chromatograms in seconds. |
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Web Site: DNA Baser - Free biology software
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| Cregex
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MS-DOS Unix |
| Cregex creates the file containing valid AWK regular expressions, from the native PROSITE data bank. This file is used in kolakowskis PROSEARCH script. Requires C compiler (source code only). |
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Download (15 kb, 07-Oct-1992) |
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| DELTA: DEscription Language fo TAxonomy
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Windows |
| A method of recording taxonomic descriptions for computer processing adopted as a standard for data exchange by the International Taxonomic Databases Working Group. Versions for Windows 3.1 and Windows 95/98/NT. |
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Web Site: Biodeversity and Biological Collections Server
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