| FASTA to multi-FASTA converter
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Mac Windows |
| This freeware tool will look for all FASTA files in the specified folder and will merge their content in a single file, generating a standard or custom Multi-FASTA file. FREEWARE! |
 Web Site: FASTA 2 multiFASTA
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| Multi-FASTA to FASTA converter
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Mac Windows |
| This FREEWARE program will split a multi-FASTA file in multiple standard FASTA files. |
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Web Site: multiFASTA spliter
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| 2DMAP
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MS-DOS |
| Constructing 2D crossover-based map. |
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Web Site: GenLink, Washington University
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| 3D-PSSM
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Internet Browser Windows |
| Protein fold recognition using 1D and 3D sequence profiles coupled with secondary structure information (Foldfit). |
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Web Site: Biomolecular Modelling Laboratory
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| ABI to FASTA free converter
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Windows |
| This free tool will batch convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button. With this automatic converter you can convert hundreds or thousands of ABI chromatogram files in seconds. All with A SINGLE PUSH OF A BUTTON! ---------- No installation process is required. |
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Web Site: DNA Baser Contig Assembler
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| ACT - Analysis for Complex Traits
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Unix |
| This software currently contains an 'ibd' program that calculates the proportion of genes identical by descent for a nuclear family, 'ml' which uses maximum likelihood methods to provide estimates of variance components for quantitative traits using linked markers, 'ql' which estimates variance components using quasilikelihood methods (for not so normally distributed data), 'multic' which performs maximum likelihood analysis for multivariate data with or without ascertainment corrections, and 'ibdn' which is a modification of the ERPA program to provide i.b.d. calculations for extended pedigrees and to be used with ml, ql, or multic. |
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Web Site: Department of Epidemiology, University of Texas
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Download (803 kb, 12-May-1998) |
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| ALLASS
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Unix |
| Program for mapping disease genes by allelic association. |
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Web Site: Department of Human Genetics, University of South Hampton
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| ALP
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Windows |
| Automated Linkage Preprocessor. Determines sizes of microsatellite fragments separated on an A.L.F. Sequencer (Pharmacia Biotech), removes stutter, performs genotyping and Mendelian checks, and formats data for Lathrop's Linkage Program Package. |
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Web Site: MRC Human Genetics Unit
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| ANALYZE I
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Unix |
| A set of useful accessory programs to the LINKAGE package. it simplifies the performance of a large array of parametric and nonparametric tests for linkage and association on data entered in LINKAGE format pedigree and parameter files. |
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Web Site: Wellcome Trust Centre for Human Genetics, University of Oxford
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| ANCML
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MS-DOS Unix |
| A program which estimates ancestor states for a continuous trait, and provides a "standard error" for the marginal distribution of each estimate. |
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Web Site: University British Columbia
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| APM
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MS-DOS Unix VMS |
| Affected Pedigree-Member Method. C and Pascal and FORTRAN source code. |
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Web Site: Department of Human Genetics, University of Pittsburgh
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| ARLEQUIN
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Windows |
| An exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data). |
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Web Site: Department of Anthropology and Ecology, University of Geneva
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| ASPEX
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Unix |
| Affected Sib Pairs EXclusion map. A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. C source code (TCL library is needed); the utility scripts are written in Perl. |
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Web Site: Stanford
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| Aligner
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Internet Browser |
| With this tool you can align easily your multiple sequences DNA or protein, based on a Clustalw engine. |
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Web Site: JustBio.com
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| Analyse
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Mac Windows |
| A program for the population genetic analysis of geographic variation and hybrid zones. |
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Web Site: Barton & Baird
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| Array Designer
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Linux Mac |
| Array Designer is a high-throughput program for designing highly specific oligos for expression and SNP detection microarrays. The program has a unique homology avoidance algorithm that ensures high specificity. The sequences are BLASTed, the results are automatically interpreted and the most optimal oligos are designed avoiding regions of signinficant homology. The program enables BLAST search of the oligos designed. This feature helps in verifying their specificity. It is also possible to BLAST search sequences against all the databases available at NCBI for cross species studies. The design can be exported in a convenient spreadsheet format for ordering synthesis.conditions. |
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Web Site: PREMIER Biosoft International
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| BETA
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Unix |
| Non-parametric linkage analysis using allele sharing in sib pairs |
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Web Site: Department of Human Genetics, University of South Hampton
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| BLAST 2.0
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Internet Browser MS-DOS |
| A tool used to identify any potential homologies of a given DNA or protein sequence with those stored in GenBank. |
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Web Site: NCBI
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| BLOCK
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Linux MS-DOS Unix |
| Blocking Gibbs sampler for pedigree analysis. This program is for linkage analysis of large complex pedigrees. |
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Web Site: Aalborg University
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| BOREL
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Unix |
| Programs for inference of genealogical relationships from genetic data, including sibship inference. |
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Web Site: University of Washington, Department of Statistics
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| BibioSphere PathwayEdition
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Internet Browser Linux Mac Unix Windows |
| BiblioSpherePE allows for dynamic data-driven network/pathway construction and analysis based on literature, the Genomatix Knowledge Base, and promoter DNA sequence analysis. It is an important component of the micro array data analysis pipeline offered by Genomatix. |
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Web Site: Genomatix
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| CASPAR
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Unix |
| Computerized Affected Sibling Pair Analyzer and Reporter. CASPAR's main novel feature is conditional linkage analyses, in which the population can be subdivided according to criteria at some loci and analyzed for linkage at other loci. CASPAR uses simulation to overcome the problems inherent in such multiple testing. |
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Download (516 kb, 12-May-1997) |
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| CEPH2MAP
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MS-DOS |
| Developed from crimap v2.4 for use with the map suite of programs. |
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Web Site: Department of Human Genetics, University of South Hampton
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| CERVUS
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Windows |
| A program for likelihood-based parentage inference using codominant marker data. It can be used to calculate allele frequencies, run simulations to determine critical values of likelihood ratios and analyse parentage in populations of animals and plants. |
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Web Site: University of Edinburgh
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| CINTMAX
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MS-DOS Mac Unix |
| A modified version of CILINK (of LINKAGE package) which is capable of analyzing CEPH pedigree data under a variaty of possible models of interference. Pascal source code. |
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Download (84 kb, 11-Feb-1994) |
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