| Torsion
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Unix |
| Torsion is a program for calculating phi, psi, omega and C-alpha pseudo-torsions. C source code. |
 Web Site: ACRM
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| Translator
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Internet Browser |
| With this tool you can translate your DNA sequences from 1 to 6 phases in formated outputs. Very clean. |
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Web Site: JustBio.com
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| VAMP
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Unix |
| Vamp is a semiempirical molecular orbital program for immediate calculation of optimized geometries and molecular orbitals. Vamp integrates easily into the user's existing computational chemistry solution. Can predict ESR spectra. |
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Web Site: Oxford Molecular Group
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| VLifeMDS™
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Windows |
| VLifeMDS (Molecular Design Suite), is a Medicinal Chemist’s workbench for computer aided drug design (CADD) and molecule discovery. VLifeMDS is completely scalable and customizable to address the variegated problems in molecular design and prediction of new molecules. |
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Web Site: VLife Sciences Technologies Pvt. Ltd.
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| Veolab
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Windows |
| System of management of the information for laboratories (LIMS). -Management and planning of samples. -Inform of completely customizable results. -Impression of work leaves. -Billing. -Adaptive to any SGC ISO 9001:2000. -Import and export of data to Microsoft Office. The computer application Veolab is a complete, simple and flexible tool that picks up the experience of Consultants, Technicians of Laboratory and Responsible for the Quality, with the purpose of helping to increase the efficiency in the internal management of the analysis laboratories. |
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Web Site: SPUCH
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| WINVIBES
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MS-DOS Windows |
| Winvibes displays normal modes of vibrations of molecules. |
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Web Site: FUNET
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| YASARA
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Linux Windows |
| A molecular graphics, modeling and simulation program. Uses PVL - the Portable Vector Language - to deliver highest performance and accuracy. Features: OpenGL graphics, publication quality ray-traced images including labels, interactive real-time simulations with well known (AMBER) and newly developed force fields (NOVA,YAMBER,YASARA), protein structure determination & prediction & analysis, docking, Yanaconda macro language, plugins can be programmed using the Python scripting language, interactive tutorials, users can create their own molecular movies. The initial stage, YASARA View, is available for free download. |
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Web Site: YASARA Biosciences
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| ZINDO
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Unix |
| ZINDO is a semi-empirical molecular-orbital program for studying the spectroscopic properties of molecules and complexes. ZINDO can be applied to a wide range of compounds, including organic and inorganic molecules, polymers, and organometallic complexes. |
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Web Site: Faculty of Chemistry, University of Karlsruhe
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| aminoXpress
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Internet Browser Windows |
| More than 12 aminoXpress ActiveX Controls integrated with such functions as Amino Acid Analysis, Building Block Sort, Digestion, Elemental Analysis, Mass Fragmentation, HPLC Retention Pattern, Isotopic Profile, Combinatorial Library, Molecular Weight, Sequence Parameters, Charge-pH Profile, ... ... |
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Web Site: aminoXpress Platform
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| chemtool
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Linux Unix |
| Chemtool is a program for (2D) drawing organic molecules easily and export them as a Xfig or EPS file. It runs under the X Window System using the GTK widget set. |
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Web Site: Thomas Volk's Homepage
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| gOpenMol
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Unix Windows |
| A graphics interface for the OpenMol set of programs that can be used to display molecular dynamics trajectories, molecular orbitals and electron densities. |
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Web Site: OpenMol Development Group
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| pathway studio
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Windows |
| PathwayAssist (was - Pathway Studio) is a product aimed at the visualization and analysis of biological pathways, gene regulation networks, and protein interaction maps. It comes with a comprehensive database that gives a snapshot of all information available in PubMed, with the focus on pathways and cell signaling networks. The software can handle a variety of tasks, including graphic drawing and layout optimization, data filtering and pathway expansion, and classification and prioritization of proteins. |
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Web Site: Ariadne Genomics
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| pirika
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Internet Browser |
| JAVA Chemistry Site. |
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Web Site: pirika
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| resnet
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Windows |
| ResNet is a comprehensive database of molecular networks and protein interactions, made by automated text processing of the whole PubMed. It contains more than 200,000 events of regulation, interaction and modification between 15,000 proteins, cell processes and small molecules. |
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Web Site: Ariadne Genomics
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| vExplorer
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Mac Windows |
| This is a metabolic control analysis tool. |
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Web Site: Future Skill Software
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