| Protecting Children's Health: Preventing Exposure to Endocrine Disruptors - A Teaching Aid
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Windows |
| PowerPoint slide show designed to be used by teachers and parents to learn about and discuss this rapidly evolving category of chemical pollutants. It presents an overview of what is known and what is not yet known at a level that everyone can understand. The very latest developments are presented along with ways to prevent or minimize children's exposure to these chemicals. Information is drawn from recent ACS Division of Environmental Chemistry symposia, U.S. EPA, and other referenced sources. A free summary and a $15 commercial version may be downloaded. |
 Web Site: Instant Reference Sources
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| Protein Function and Metabolic Pathways (PFMP) Database Project
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Internet Browser |
| The Protein Function project is an integrated resource on protein function and metabolic pathways. The main goal of the project is to develop an object-oriented database for representing information on protein function and biochemical pathways. |
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Web Site: EBI
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| Protein Morpher
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Internet Browser |
| Movies of configurational changes of Recoverin (including closeup of the effect of calcium on an EF Hand), Calmodulin, Influenza Hemagglutinin, and CD11b Leukocyte Integrin MIDAS Adhesion Domain. Requires Chime 2 and Netscape Communicator 4.04 or better. |
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Web Site: University of Massachusetts, Amherst
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| Protein Purification
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Mac Windows |
| This problem-based laboratory simulation was written in C and is available for use on IBM PCs with Windows and on Apple Macintosh computers. It allows science undergraduates to experiment with different protein purification protocols under realistic laboratory conditions in the form of a research project. The purpose of the project is to purify one or more enzymes from a given mixture. |
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Web Site: BioNet
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| ProteoIQ
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Linux Mac Windows |
| PROTEOIQ by BIOINQUIRE, is advanced software for comparative and quantitative proteomics. PROTEOIQ supports the entire proteomic data analysis pipeline, from statistical validation to quantification. |
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Web Site: BIOINQUIRE
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| QUILT
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Unix |
| A program to detect contiguous stretches of hydrophobic surface area on the surfaces of macromolecules. |
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Web Site: EMBL Heidelberg
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| QuteMol
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Linux Mac Windows |
| QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilites through OpenGL shaders to offers an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of large molecules or complex proteins. |
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Web Site: QuteMol
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| REFERASS
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MS-DOS |
| Derivation of the strict steady-state equations and/or those corresponding to the usual assumption that one or more of the reversible steps are in rapid equilibrium. |
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Download (112 kb, 22-May-1997) |
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| Replace
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Unix |
| A suite of programs for molecular replacement calculations. |
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Web Site: Structural Biology Program, Columbia University
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| ResNet
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Windows |
| ResNet is a comprehensive database of molecular networks and protein interactions, derived from automatic analysis of the whole PubMed. It contains more than 200,000 events of regulation, interaction and modification between 15,000 proteins, cell processes and small molecules. |
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Web Site: Ariadne Genomics
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| SIgMA: SImulations of MAcromolecules
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Linux Unix |
| A program for conducting energy minimization, free molecular dynamics, constrained and restrained molecular dynamics, and molecular dynamics with free-energy methods. |
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Web Site: University of North Carolina
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| Scatterring Simon
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MS-DOS Mac |
| Scattering Simon calculates x ray scattering patterns as they would occur from an array of scattering centers displayed on the left side of the screen. |
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Web Site: University of Rochester
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| SeqPainter
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Internet Browser |
| Color your amino-acids sequence according to their properties (default by hydrophobicity). |
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Web Site: JustBio.com
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| SimGlycan
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| SimGlycan matches the MS/MS spectra with its own comprehensive, robust and annotated glycan database to predict the structure of the glycan. It generates a list of all probable glycans saving time, money and the frustration of laborious work. Each structure is scored to help judge which results closely match the experimental data. Alongside the probable glycan structure important information such as the glycan class, reaction, pathway and enzyme is also made available. |
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Web Site: PREMIER Biosoft
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| SimVector
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Mac Windows |
| SimVector is a comprehensive tool to draw publication quality plasmid maps and simulate cloning experiments like Gateway TA and restriction cloning with the help of intuitive cloning wizards. It exports images in vector graphic format, producing the highest quality images for presentation and publication in journals. With its powerful and intuitive drawing tools it is easy to enhance your vector maps with patterns, colors, fills and annotations. |
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Web Site: PREMIER Biosoft
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| Simulis Conversions
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Windows |
| Physical units conversion management tool. This component can be plugged in any application that manipulates physical dimension in order to easily manage associated units. |
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Web Site: ProSim - Software and Services for Process Simulation
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| Simulis Properties
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Mac Windows |
| Pure components intrinsic properties (constant or temperature dependant) engine. This component can be plugged in any application that only needs to calculate pure component properties. |
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Web Site: ProSim - Software and Services for Process Simulation
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| Simulis Thermodynamics
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Windows |
| Thermophysical properties calculation server available as an MS-Excel add-in, a Matlab toolbox or as a module pluggable in any other software that requires quality thermophysical properties. Provides engineers and software developers with an accurate and reliable thermophysical properties calculation server. These calculations can be integrated in any package intended for wider fields of application (equipment sizing, system modeling, etc). |
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Web Site: ProSim - Software and Services for Process Simulation
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| SwaN-MR 3.5.2
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Mac |
| NMR processing software. |
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Web Site: Universidade de Santiago
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| TERANODE Design Suite
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Linux Mac Windows |
| TERANODE Design Suite Starter Edition is a free informatics platform providing scientists and lab personnel model-based collaboration, communication, and analytics by integrating model and data lifecycle management. The Teranode Platform empowers scientists to develop designs, capture experimental results, and communicate findings using one solution. Teranode delivers a complete software platform to allow dynamic collaboration throughout the discovery and development cycle while creating a searchable, reusable common repository to accelerate R&D. |
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Web Site: Teranode Corporation
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| THOR+DVM
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Unix |
| THOR+DVM is a general purpose molecular dynamics computer simulation package for the study of solids and biomolecular systems. |
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Web Site: Laboratory of Molecular Modelling, University of Bahia
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| TMA Foresight
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| TMA Foresight is a statistical software for clinicians, pathologists and research labs working on cancer research using tissue microarrays . TMA Foresight supports statistical techniques such as Kaplan Meier survival analysis, cox Regression, Principal Component Analysis, Multivariate Analysis and Hierarchical Clustering on tissue microarray data to find relatedness of biomarker expression and for grouping cancer patients into cohorts. The software, after performing the analysis, interprets the results in plain English which need no interpretation. |
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Web Site: PREMIER Biosoft
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| Teaching Aids on Cellular Respiration
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Windows |
| A package of CAL based teaching aids covering the TCA cycle and oxidative phosphorylation. Designed for use by first year science undergraduates to supplement lectures and tutorials in Biochemistry and related courses. |
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Web Site: BioNet
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| The Molecular Basis of Medicine
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Mac Windows |
| This package is primarily aimed at medical students without 'A'-level Biology, but is also suitable for students in Biochemistry and related subjects. It may also be suitable as an introduction to gene expression for any students. The content consists of an introduction to cell structure (with diagrams and electron micrographs); an introduction to proteins, lipids and nucleic acids; DNA replication, transcription and translation (illustrated with animations of these processes). A glossary of scientific terms is provided, linked to hot words in the text, so that the user can easily jump to the glossary and then return to the tutorial. |
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Web Site: BioNet
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| Time-resolved X-ray Crystallography Information
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Internet Browser |
| Time-resolved crystallography (TC) uses an intense synchrotron X-ray source and Laue data collection techniques to greatly reduce crystallographic exposure times. Consequently, multiple exposures may be taken that capture the evolution of the crystallographic unit cell as it reacts over time. This page contains useful links and information on TC. |
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Web Site: Yale University
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